To work directly with specific genes, scientists prepare well-defined DNA segments in multiple identical copies by a process called
DNA cloning
are small, circular DNA molecules that replicate separately from the bacterial chromosome
plasmids
Researchers can insert DNA into a plasmid to produce a ______________ ________ _which contains DNA from two different sources
recombinant DNA molecule,
production of multiple copies of a single gene is a type of DNA cloning called
useful for amplifying genes to produce a protein product for research, medical, or other purposes
gene cloning
A plasmid used to clone a foreign gene is called a
cloning vector
cuts DNA molecules at a specific DNA sequence
Restriction enzyme
The site at which restriction enzymes cut
restriction sites
a restriction enzyme usually makes many cuts in a long DNA molecule yielding…
restriction fragments
The most useful restriction enzymes cut DNA in a staggered way, producing fragments with at least one single-stranded end
bond with complementary of these in other fragements and use DNA ligase to seal the bond
sticky ends
What is often used as a cloning vector and why?
Bacterial plasmids
readily obtained
easily manipulated
easily introduced into bacterial cells
rapidly multiplied once in the bacteria
a decives used to separate and visualize the restriction fragments produced
This technique uses a gel made of a polymer that has microscopic holes of different sizes, through which shorter fragments can travel faster
gel electrophoresis
can produce many copies of a specific target segment of DNA,
uses a three step process: heating (denaturing), cooling (annealing), and extension
The process uses primers, short single-stranded DNA molecules complementary to sequences to either side of the target sequence
Polymerase chain reaction PCR
a cloning vector that contains a highly active bacterial promoter
used to overcome difference in promoters
expression vector
applying a brief electrical pulse to create temporary holes in plasma membranes
method of introducing recombinat DNA into eukaryotic cells
electroporation
complementary molecules of DNA or RNA that can detect mRNA
nucleic acid probes
uses fluorescent dyes attached to probes to identify the location of specific mRNAs in place in the intact organism
in situ hybridication
useful for comparing amounts of specific mRNAs in several samples at the same time
is used to synthesize a complementary DNA (cDNA) copy of each mRNA in the sample and uses PCR to amplify DNA segaments of interest from the cDNA
Reverse transcriptase-polymerase chain reaction (RT-PCR)
sequence cDNA samples from different tissues or embryonic stages to determine the gene expression differences between them
RNAs are isolated, cut into short, similar-sized fragments, converted into cDNAs, and sequenced
powerful because:
It does not depend on knowing genomic sequences
It can measure levels of expression over a wide range
Careful analysis provides a wealth of information about expression of a particular gene
RNA sequencing/ RNA-seq
compare patterns of gene expression in different tissues at different times or under different conditions
DNA microarray assay
specific mutations are introduced into a cloned gene, altering or destroying its function
When the mutated gene is returned to the cell, the normal gene’s function might be determined by examining the mutant’s phenotype
in vitro mutagenesis
engineer the new allele so that it is favored for inheritance over the wild type allele
gene drive
can silence gene expression
Synthetic double-stranded RNA molecules matching the sequence of a particular gene are used to break down or block the gene’s mRNA
RNAi
single nucleotide variants, are among the most useful genetic markers
SNPs (single nucleotide polymorphisms)
is a relatively unspecialized cell that can reproduce itself indefinitely, or under certain conditions can differentiate into one or more types of specialized cells
stem cell
a cell that can generate a complete new organism
totipotent
embroyonic stem cells that are capable of differentiating into many different cell types
pluripotent
the manipulation of organisms or their components to make useful products
biotechnology
the introduction of genes into an afflicted individual for therapeutic purposes
gene therapy
is a gene that is transferred from one organism into another
transgene
animals that can express a transgene
transgenic
an individuals uinique set of genetic markers, can be obtained by analysis of tissue or body fluids
genetic profile
Genetic profiles are currently analyzed using genetic markers
are variations in the number of repeats of specific DNA sequences; they are analyzed by PCR and gel electrophoresis
called short tandem repeats (STRs) (repetive units of DNA)