Transcription
Process where DNA is copied into RNA
Translation
Process where RNA is converted into Protein
Replication
Process where DNA is duplicated to form new DNA strands
Genetic Code Exceptions
RNA can be replicated (in viruses) and RNA can be transcribed to DNA
Triplet Code
Ribosomes translate mRNA in groups of three nucleotides
Codons
Three-nucleotide sequences on mRNA that code for specific amino acids
tRNA
RNA molecules with anticodons complementary to mRNA codons
Redundancy in Genetic Code
Presence of multiple codons coding for the same amino acid
Start Codon
AUG, codes for methionine and initiates translation
Stop Codon
UAA, UGA, UAG, signals the end of translation
Wobble Pairing
Flexibility in the third base of the codon during translation
Wobble Pairing
Pairing of bases in RNA that deviates from the typical Watson-Crick base pairing
Mutation
A change in the DNA sequence
Point Mutation
One nucleotide substitution, three types (nonsense, missense, and silent)
Silent Mutation
Results in the same amino acid
Missense Mutation
Results in a new amino acid
Nonsense Mutation
Results in a STOP codon
Insertion
Addition of nucleotides
Deletion
Subtraction of nucleotides
Frameshift
Insertion or Deletion of a number of nucleotides that are not divisible by three
Causes of Frameshift
Alters the reading frame, can lead to changes in the protein sequence, and can lead to a premature stop codon
mRNA
Messenger RNA, codes for proteins
tRNA
Transfer RNA, carries amino acid to mRNA/Ribosome during translation
rRNA
Ribosomal RNA, component of ribosomes
Ribozymes
Catalytic, biological enzymes
Transcription Start Site
RNA polymerase binds to promoter
Helicase activity
RNA polymerase unwinds the DNA
The template strand of DNA
What RNA polymerase uses to create a complementary RNA molecule
mRNA is complementary to….
The template strand of DNA
mRNA has the same sequence as….
The coding strand
RNA polymerase
DNA dependent
Transcription Stop Site
When RNA Polymerase reaches this site, transcription stops
Eukaryotic mRNA Processing
The RNA molecule created by RNA polymerase undergoes several modifications to form mRNA
Does RNA polymerase have proofreading activity?
No, and it is error prone!
Where does Eukaryotic mRNA processing occur?
Nucleus
5’ capping
Addition of a methylated guanine at the 5’ end of RNA polymerase
3’ Polyadenylation
Addition of a Poly A-Tail to the 3’ end
What does 5’ capping and 3’ Polyadenylation do?
Protect the RNA from degradation and promote translation
RNA splicing
Non-Coding Regions (Introns) are removed, leaving the coding regions (Exons)
Alternative Splicing
One pre-mRNA molecule can be spliced in multiple ways to produce multiple protein products from a single gene
snRNPs (Small nuclear ribonucleoproteins)
complexes of proteins and small nuclear RNAs (snRNAs)
Spliceosomes
Carries out splicing, snRNPs binded to pre-mRNA
Five Carbon Sugar
Ribose and Deoxyribose
Ribose
Backbone of RNA, 2’ and 3’ OH groups
Deoxyribose
Backbone of DNA, 3’ OH group, loss of 2’ OH group increases stability of DNA
Nitrogeneous Bases
Purines and Pyrimidines
Purines
Adenine and Guanine, two fused rings
Pyrimidines
Cytosine, Thymine, and Uracil
Thymine
In DNA only
Uracil
In RNA only
Nucleoside
Five Carbon Sugar + Nitrogeneous Base, can be phosphorylated to form nucleotides
Nucleotides
Nucleoside + Phosphate, Building block of RNA and DNA, and important source of energy for metabolic processes (Ex: ATP)
Watson-Crick Base Pairing
AT or AU has 2 hydrogen bonds, CG has 3 hydrogen bonds
Watson-Crick Model of DNA
Double helix formed between two antiparallel single-stranded DNA molecules
Single-Stranded DNA Molecule
A polymer of deoxynucleotides held together by phosphodiester bonds (sugar phosphate backbone)
How are single-stranded DNA molecules held together?
By base stacking and hydrogen bonds between the nitrogeneous bases
Hybridization
Process by which a DNA/RNA molecule binds to a complementary DNA/RNA molecule
Northern Blot
A lab technique hybridization is used in
DNA replication
Process of producing identical copies of DNA, occurs in all living organisms, basis for the inheritance of genetic material
Semi-Conservative Replication
Double-stranded DNA is separated into two pieces of single-stranded DNA molecules, each single-stranded DNA serves as a template for the creation of a new complementary strand, and results in two new identical strands composed of one old and one new strand
Origin of Replication
Specific point in DNA where DNA replication is initiated
Prokaryote Origin of Replication
One origin of replication and one circular chromosomes
Eukaryote Origin of Replication
Multiple linear chromosomes and many origins of replication
DNA Helicase
A DNA Replication enzyme, separates double-stranded DNA to form a replication fork with two single-stranded DNA templates
Topoisomerase/DNA gyrase
Relieves strain while unwinding DNA
DNA primase
Synthesizes a short fragment of RNA complementary to the single-stranded DNA
DNA polymerase (DNA pol III in prokaryotes)
Continuously adds nucleotides in the 5’ to 3’ direction
Leading Strand
Is synthesized continuously
Lagging Strand
Requires multiple RNA primers and is synthesized in fragments (Okazaki Fragments)
DNA Ligase
Seals the gaps between two DNA fragments
DNA Polymerase (DNA pol I in prokaryotes)
Replaces RNA primer with DNA
Traits of DNA Polymerase
Has proofreading activity and is a DNA dependent polymerase
Traits of DNA Primase
Is a DNA dependent Polymerase
End Replication Problem
The lagging strand cannot be fully replicated by DNA polymerase in Eukaryotes
Telomeres
In Eukaryotes, the ends of the chromosomes that have a repeating nucleotide sequence
Telomere’s Function
To protect the chromosome from degradation
Telomerase
RNA-dependent DNA polymerase (Reverse Transcriptase) that can extend telomeres
Chromosomal Proteins
Histones
Histones
Proteins that help to package and organize DNA in Eukaryotes
DNA is attracted to histone proteins by…
Electrostatic interactions
The sugar phosphate backbone in DNA gives it a…
Negative Charge
Histone proteins have…
Amino acids with positive charges
Nucleosome
DNA wrapped around octamers of a histone proteins
Chromatin
“Beads on a chain” structure
30 nm Fiber
Coiling of Chromatin
Chromosome
Super coiling of 30nm fibers
Topoisomerases
Enzymes for supercoiling DNA
Prokaryote Chromosome Organization
Do not have histones and pack their DNA by supercoiling
Single Coding DNA
Contain the majority of protein coding sequences
Repetitive DNA
Mostly non-coding but are involved in gene expression regulation, is highly variable and used in forensics testing
Tandem Repeats
Adjacent repetitions of DNA
Minisatelities
Tandem repeats between 10-60 nucleotides
Microsatelities
Tandem repeats <10 nucleotides
Hungtington’s Disease
The result of microsatelities/short tandem repeats
Euchromatin
Lightly packed form of chromatin, DNA can be actively transcribed
Heterochromatin
Densely packed form of chromatin, DNA cannot be transcribed
Constitutive Heterochromatin
Repetitive DNA with structural roles (Ex: Centromeres and Telomeres)
Facultative Heterochromatin
Coding regions of DNA that have been silenced