Biology

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Tags and Description

All Bio Topics on the MCAT

532 Terms

1

Transcription

Process where DNA is copied into RNA

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Translation

Process where RNA is converted into Protein

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3

Replication

Process where DNA is duplicated to form new DNA strands

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4

Genetic Code Exceptions

RNA can be replicated (in viruses) and RNA can be transcribed to DNA

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5

Triplet Code

Ribosomes translate mRNA in groups of three nucleotides

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6

Codons

Three-nucleotide sequences on mRNA that code for specific amino acids

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7

tRNA

RNA molecules with anticodons complementary to mRNA codons

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8

Redundancy in Genetic Code

Presence of multiple codons coding for the same amino acid

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9

Start Codon

AUG, codes for methionine and initiates translation

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10

Stop Codon

UAA, UGA, UAG, signals the end of translation

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11

Wobble Pairing

Flexibility in the third base of the codon during translation

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12

Wobble Pairing

Pairing of bases in RNA that deviates from the typical Watson-Crick base pairing

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13

Mutation

A change in the DNA sequence

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14

Point Mutation

One nucleotide substitution, three types (nonsense, missense, and silent)

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15

Silent Mutation

Results in the same amino acid

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16

Missense Mutation

Results in a new amino acid

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17

Nonsense Mutation

Results in a STOP codon

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18

Insertion

Addition of nucleotides

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19

Deletion

Subtraction of nucleotides

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20

Frameshift

Insertion or Deletion of a number of nucleotides that are not divisible by three

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21

Causes of Frameshift

Alters the reading frame, can lead to changes in the protein sequence, and can lead to a premature stop codon

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22

mRNA

Messenger RNA, codes for proteins

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23

tRNA

Transfer RNA, carries amino acid to mRNA/Ribosome during translation

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24

rRNA

Ribosomal RNA, component of ribosomes

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25

Ribozymes

Catalytic, biological enzymes

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26

Transcription Start Site

RNA polymerase binds to promoter

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27

Helicase activity

RNA polymerase unwinds the DNA

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28

The template strand of DNA

What RNA polymerase uses to create a complementary RNA molecule

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29

mRNA is complementary to….

The template strand of DNA

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30

mRNA has the same sequence as….

The coding strand

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31

RNA polymerase

DNA dependent

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32

Transcription Stop Site

When RNA Polymerase reaches this site, transcription stops

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33

Eukaryotic mRNA Processing

The RNA molecule created by RNA polymerase undergoes several modifications to form mRNA

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34

Does RNA polymerase have proofreading activity?

No, and it is error prone!

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35

Where does Eukaryotic mRNA processing occur?

Nucleus

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36

5’ capping

Addition of a methylated guanine at the 5’ end of RNA polymerase

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37

3’ Polyadenylation

Addition of a Poly A-Tail to the 3’ end

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38

What does 5’ capping and 3’ Polyadenylation do?

Protect the RNA from degradation and promote translation

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39

RNA splicing

Non-Coding Regions (Introns) are removed, leaving the coding regions (Exons)

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40

Alternative Splicing

One pre-mRNA molecule can be spliced in multiple ways to produce multiple protein products from a single gene

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41

snRNPs (Small nuclear ribonucleoproteins)

complexes of proteins and small nuclear RNAs (snRNAs)

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42

Spliceosomes

Carries out splicing, snRNPs binded to pre-mRNA

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43

Five Carbon Sugar

Ribose and Deoxyribose

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44

Ribose

Backbone of RNA, 2’ and 3’ OH groups

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45

Deoxyribose

Backbone of DNA, 3’ OH group, loss of 2’ OH group increases stability of DNA

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46
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47

Nitrogeneous Bases

Purines and Pyrimidines

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48

Purines

Adenine and Guanine, two fused rings

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49

Pyrimidines

Cytosine, Thymine, and Uracil

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50

Thymine

In DNA only

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51

Uracil

In RNA only

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52

Nucleoside

Five Carbon Sugar + Nitrogeneous Base, can be phosphorylated to form nucleotides

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53

Nucleotides

Nucleoside + Phosphate, Building block of RNA and DNA, and important source of energy for metabolic processes (Ex: ATP)

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54

Watson-Crick Base Pairing

AT or AU has 2 hydrogen bonds, CG has 3 hydrogen bonds

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55

Watson-Crick Model of DNA

Double helix formed between two antiparallel single-stranded DNA molecules

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56

Single-Stranded DNA Molecule

A polymer of deoxynucleotides held together by phosphodiester bonds (sugar phosphate backbone)

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57

How are single-stranded DNA molecules held together?

By base stacking and hydrogen bonds between the nitrogeneous bases

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58

Hybridization

Process by which a DNA/RNA molecule binds to a complementary DNA/RNA molecule

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59

Northern Blot

A lab technique hybridization is used in

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60

DNA replication

Process of producing identical copies of DNA, occurs in all living organisms, basis for the inheritance of genetic material

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61

Semi-Conservative Replication

Double-stranded DNA is separated into two pieces of single-stranded DNA molecules, each single-stranded DNA serves as a template for the creation of a new complementary strand, and results in two new identical strands composed of one old and one new strand

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62

Origin of Replication

Specific point in DNA where DNA replication is initiated

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63

Prokaryote Origin of Replication

One origin of replication and one circular chromosomes

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64

Eukaryote Origin of Replication

Multiple linear chromosomes and many origins of replication

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65
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66

DNA Helicase

A DNA Replication enzyme, separates double-stranded DNA to form a replication fork with two single-stranded DNA templates

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67

Topoisomerase/DNA gyrase

Relieves strain while unwinding DNA

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68

DNA primase

Synthesizes a short fragment of RNA complementary to the single-stranded DNA

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69

DNA polymerase (DNA pol III in prokaryotes)

Continuously adds nucleotides in the 5’ to 3’ direction

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70

Leading Strand

Is synthesized continuously

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71

Lagging Strand

Requires multiple RNA primers and is synthesized in fragments (Okazaki Fragments)

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72

DNA Ligase

Seals the gaps between two DNA fragments

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73

DNA Polymerase (DNA pol I in prokaryotes)

Replaces RNA primer with DNA

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74

Traits of DNA Polymerase

Has proofreading activity and is a DNA dependent polymerase

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75

Traits of DNA Primase

Is a DNA dependent Polymerase

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76

End Replication Problem

The lagging strand cannot be fully replicated by DNA polymerase in Eukaryotes

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77

Telomeres

In Eukaryotes, the ends of the chromosomes that have a repeating nucleotide sequence

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78

Telomere’s Function

To protect the chromosome from degradation

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79

Telomerase

RNA-dependent DNA polymerase (Reverse Transcriptase) that can extend telomeres

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80

Chromosomal Proteins

Histones

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81

Histones

Proteins that help to package and organize DNA in Eukaryotes

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82

DNA is attracted to histone proteins by…

Electrostatic interactions

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83

The sugar phosphate backbone in DNA gives it a…

Negative Charge

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84

Histone proteins have…

Amino acids with positive charges

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85

Nucleosome

DNA wrapped around octamers of a histone proteins

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86

Chromatin

“Beads on a chain” structure

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87

30 nm Fiber

Coiling of Chromatin

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88

Chromosome

Super coiling of 30nm fibers

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89

Topoisomerases

Enzymes for supercoiling DNA

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90

Prokaryote Chromosome Organization

Do not have histones and pack their DNA by supercoiling

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91

Single Coding DNA

Contain the majority of protein coding sequences

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92

Repetitive DNA

Mostly non-coding but are involved in gene expression regulation, is highly variable and used in forensics testing

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93

Tandem Repeats

Adjacent repetitions of DNA

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94

Minisatelities

Tandem repeats between 10-60 nucleotides

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95

Microsatelities

Tandem repeats <10 nucleotides

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96

Hungtington’s Disease

The result of microsatelities/short tandem repeats

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97

Euchromatin

Lightly packed form of chromatin, DNA can be actively transcribed

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98

Heterochromatin

Densely packed form of chromatin, DNA cannot be transcribed

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99

Constitutive Heterochromatin

Repetitive DNA with structural roles (Ex: Centromeres and Telomeres)

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100

Facultative Heterochromatin

Coding regions of DNA that have been silenced

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