Metabolism
All of the chemical reactions in an organism
Metabolic pathways
Series of chemical reactions that either build complex molecules or break up
Catabolic metabolic pathway
Releases energy, breaks down complex molecules into simple compounds
Anabolic metabolic pathway
Consumes energy, builds complex compounds
Energy
Ability to do work
Organisms need energy to..
Survive and function
Kinetic energy
Energy associated w motion
Thermal energy
Energy associated w the movement of atoms or molecules
Potential energy
Stored energy
Chemical energy
Potential energy available for release in a chemical reaction
Study of energy transformations
Thermodynamics (does not describe the rate of the reaction); law applies to the universe as a whole
1st law
Energy cannot be created nor destroyed
2nd law
Energy transformation increases the entropy (disorder) of the universe
What do scientists use the concept of free energy for?
To determine the likelihood of reactions in organisms, or if the reactions are energetically favorable
The free energy change of reactions determine whether or not the reaction occurs..
Spontaneously
Based on free energy changes chemical reactions can be classified as
Exergonic or endergonic
Exergonic reactions (Spontaneous)
Releases energy, ex. Cellular rep G<O
Endergonic reactions (NOT spontaneous)
Absorbs free energy, ex. Photosynthesis
Cells are NOT at equilibrium
True
Mechanical work in cell
Movement; cilia movement of chromosomes, contraction of muscles
Transport work in cell
Pumping substances across membranes AGAINST SPONTANEOUS MOVEMENT
Chemical work in cell
Synthesis of molecules (ex. Building polymers from monomers)
ATP
Molecules that organisms use as a source of energy to perform work
what does atp do?
ATP couples Exergonic reactions to endergonic reactions to power CELLULAR WORK (Exergonic process drives endergonic process
How do organisms obtain energy?
By breaking the bond between the 2nd and 3rd phosphate in a hydrolysis reaction
Phosphorylation
The released phosphate moves to another molecules to give energy
Energy in the hydrolysis of ATP
Comes from the lowering of free energy NOT from the bond itself
Regeneration of ATP
ADP can be regenerated to ATP via the ATP cycle
Enzymes
Macrocolecules that catalyze reactions by lowering activation evergy
Substrate
Substrates are held in active site by WEAK INTERACTIONS
Induced fit
Enzymes will change the shape of their active site to allow the substance to bind better
What affects the 3D shape of enzymes
Temp, pH, chemicals
Optimal conditions
Being outside the normal pH range can cause hydrogen bonds in the enzyme to break, changing the shape of the enzyme
Cofactors (can be bound loosely or tightly)
Non protein molecules that assist in enzyme function
Inorganic cofactors
Consist of metals
Holoenzyme
An enzyme with the cofactor attached
Coenzymes
Organic cofactors
Enzyme inhibitors
Reduce the activity of specific enzymes
Permanent Inhibitors
Inhibitor binds w covalent bonds ex. Toxins and poisons
Reversible Inhibitors
Inhibitor binds w weak interactions
Competitive inhibitors
Reduce enzyme activity by blocking substrates from binding to the active site, inhibition can be reversed w increased substrates concentrations
Non competitive Inhibitors
Bind to an area other than the active site (allosteric site), which changes the shape of the active site which prevents substrates from binding
A cell must be able to regulate its metabolic pathways by
Controlling where and where enzymes are active and switching genes that code for enzymes on or off
Allosteric regulation
Molecules bind (non covalent interactions) to an allosteric site which changes the shape and function of the active site
Allosteric regulation may result in
Inhibition or stimulation (by an activator) of the enzymes activity
Allosteric activator
Substrate binds to allosteric site and stabilizes the shape of the enzyme so that the active sites remains open
Allosteric inhibitor
Substrate binds to allosteric site and stabilizes the enzyme shape so that the active sites are closed
Allosteric regulation: cooperatively
Substrate binds to one active site (on an enzyme with more than one active site) which stabilizes the active form
Feedback inhibition
The end product of a metabolic pathway can act as an inhibitor to an early enzyme in the same pathway