Ap bio - enzymes

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Metabolism

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49 Terms

1

Metabolism

All of the chemical reactions in an organism

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2

Metabolic pathways

Series of chemical reactions that either build complex molecules or break up

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3

Catabolic metabolic pathway

Releases energy, breaks down complex molecules into simple compounds

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4

Anabolic metabolic pathway

Consumes energy, builds complex compounds

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5

Energy

Ability to do work

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6

Organisms need energy to..

Survive and function

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7

Kinetic energy

Energy associated w motion

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8

Thermal energy

Energy associated w the movement of atoms or molecules

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9

Potential energy

Stored energy

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10

Chemical energy

Potential energy available for release in a chemical reaction

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11

Study of energy transformations

Thermodynamics (does not describe the rate of the reaction); law applies to the universe as a whole

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12

1st law

Energy cannot be created nor destroyed

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13

2nd law

Energy transformation increases the entropy (disorder) of the universe

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14

What do scientists use the concept of free energy for?

To determine the likelihood of reactions in organisms, or if the reactions are energetically favorable

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15

The free energy change of reactions determine whether or not the reaction occurs..

Spontaneously

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16

Based on free energy changes chemical reactions can be classified as

Exergonic or endergonic

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17

Exergonic reactions (Spontaneous)

Releases energy, ex. Cellular rep G<O

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18

Endergonic reactions (NOT spontaneous)

Absorbs free energy, ex. Photosynthesis

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19

Cells are NOT at equilibrium

True

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20

Mechanical work in cell

Movement; cilia movement of chromosomes, contraction of muscles

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21

Transport work in cell

Pumping substances across membranes AGAINST SPONTANEOUS MOVEMENT

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22

Chemical work in cell

Synthesis of molecules (ex. Building polymers from monomers)

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23

ATP

Molecules that organisms use as a source of energy to perform work

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24

what does atp do?

ATP couples Exergonic reactions to endergonic reactions to power CELLULAR WORK (Exergonic process drives endergonic process

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25

How do organisms obtain energy?

By breaking the bond between the 2nd and 3rd phosphate in a hydrolysis reaction

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26

Phosphorylation

The released phosphate moves to another molecules to give energy

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27

Energy in the hydrolysis of ATP

Comes from the lowering of free energy NOT from the bond itself

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28

Regeneration of ATP

ADP can be regenerated to ATP via the ATP cycle

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29

Enzymes

Macrocolecules that catalyze reactions by lowering activation evergy

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30

Substrate

Substrates are held in active site by WEAK INTERACTIONS

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31

Induced fit

Enzymes will change the shape of their active site to allow the substance to bind better

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32

What affects the 3D shape of enzymes

Temp, pH, chemicals

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33

Optimal conditions

Being outside the normal pH range can cause hydrogen bonds in the enzyme to break, changing the shape of the enzyme

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34

Cofactors (can be bound loosely or tightly)

Non protein molecules that assist in enzyme function

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35

Inorganic cofactors

Consist of metals

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36

Holoenzyme

An enzyme with the cofactor attached

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37

Coenzymes

Organic cofactors

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38

Enzyme inhibitors

Reduce the activity of specific enzymes

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39

Permanent Inhibitors

Inhibitor binds w covalent bonds ex. Toxins and poisons

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40

Reversible Inhibitors

Inhibitor binds w weak interactions

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41

Competitive inhibitors

Reduce enzyme activity by blocking substrates from binding to the active site, inhibition can be reversed w increased substrates concentrations

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42

Non competitive Inhibitors

Bind to an area other than the active site (allosteric site), which changes the shape of the active site which prevents substrates from binding

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43

A cell must be able to regulate its metabolic pathways by

Controlling where and where enzymes are active and switching genes that code for enzymes on or off

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44

Allosteric regulation

Molecules bind (non covalent interactions) to an allosteric site which changes the shape and function of the active site

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45

Allosteric regulation may result in

Inhibition or stimulation (by an activator) of the enzymes activity

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46

Allosteric activator

Substrate binds to allosteric site and stabilizes the shape of the enzyme so that the active sites remains open

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47

Allosteric inhibitor

Substrate binds to allosteric site and stabilizes the enzyme shape so that the active sites are closed

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48

Allosteric regulation: cooperatively

Substrate binds to one active site (on an enzyme with more than one active site) which stabilizes the active form

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49

Feedback inhibition

The end product of a metabolic pathway can act as an inhibitor to an early enzyme in the same pathway

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