eukaryotes
linear and multiple chromosomes
dna in nucleus
prokaryotes
single circular chromosome
free-floating
rRNA
(structural) ribosomes
tRNA
brings amino acids to ribosomes for protein synthesis
mRNA
messenger
regulation of other genes and protein coding
pyrimidines
1 carbon-nitrogen ring
cytosine, thymine, uracil
purines
2 carbon-nitrogen rings
adenine, guanine
plasmids
smaller circular pieces of DNA in both eukaryotes and prokaryotes
leading strand
5’ to 3’ towards the fork and is continuously built
lagging strand
runs 5’ to 3’ away from the fork and is made in okazaki fragments
okazaki fragments
short sections of DNA formed at the time of discontinuous synthesis of the lagging strand during replication of DNA
DNA polymerase
adds nucleotides to growing strand
primer
shows DNA polymerase where to begin building
helicase
unwinds DNA
topoisomerase
prevents double helix from becoming too tightly wound as DNA is opened up
ligase
goes through and seals holes left by primase (closes)
repressors
bind to pieces of DNA called operators and reduces transcription
operators
the DNA segment where the repressor molecule binds to the operon
activators
increase transcription of the operon
operon
cluster of genes that transcribes multiple proteins
can be turned on from off by an inducer
can be turned off from on by a core repressor
polymerase chain reaction
produces many copies of a target template DNA sequence (not natural)
DNA cloning
method in which many copies of a DNA fragment of interest are made
gel electrophoresis
separates DNA fragments based on their size
*shorter fragments go farther
DNA sequencing
determining the sequence of nucleotide bases in a DNA molecule
DNA replication steps
initiation, elongation, termination
codons
nucleotides read in groups of 3 that code for amino acid sequences
Transcription
the process of making RNA from DNA in order to transfer genetic information out of the nucleus and to the site of protein synthesis (the ribosomes)
COPYING
Initiation: RNA polymerase binds to a sequence of DNA at the beginning of a gene and the RNA polymerase separates the strands
Elongation: RNA polymerase reads template strand and builds an RNA molecule out of complementary nucleotides (same process as reading the template strand but T is replaced with U)
Termination: terminator sequences are coded for (STOP) and signal the completion of RNA transcript
Translation
mRNA is decoded to build a protein with a specific series of amino acids
tRNA connects mRNA codons to the amino acids they encode
its anticodons bond to specific mRNA codons
Initiation: ribosome assembles around mRNA and is necessary to begin translation… amino acids from the tRNA are getting lined up
Elongation: amino acid chain gets longer
Termination: stop codon enters ribosome triggering events that separate chain from tRNA
gene expression
the process by which instructions in the DNA are transcribed and translated into a functional protein
*the flow of information is from DNA to RNA to protein
DNA to RNA= transcription
RNA to protein= translation
exons and introns
exon:
intron:
regulatory sequences and proteins
sequences: stretches of DNA that can be used to either promote or inhibit protein synthesis
regulatory proteins are used to assist with the promotion of inhibition of protein synthesis
*the interaction of regulatory sequences with regulatory proteins controls transcription
epigentic changes
reversible modification of DNA or histones
histones: proteins used to wrap DNA around
slight chemical modifications can cause tight packing or loose packing of DNA
*this regulates gene expression (via accessibility)
cell differentiation
cells within the same organism having different phenotypes
transcription factors
proteins that promote or inhibit transcription of a gene