What is metabolism?
The totality of an organism’s chemical reactions
What is a metabolic pathway?
The sequence of enzyme-catalyzed reactions that begin with a specific molecule and end with a product (each step is catalyzed by a specific enzyme)
What is a catabolic pathway?
Pathway that releases energy by breaking down complex molecules into simpler compounds
What is an anabolic pathway?
Pathway that consumes energy to build complex molecules from simpler ones (also known as biosynthetic pathways)
What is energy?
The capacity to cause change
What is the first law of thermodynamics?
Energy can be transferred and transformed, but it cannot be created or destroyed (also called the principle of conservation of energy)
What is the second law thermodynamics?
Every energy transfer or transformation increases the entropy of the universe
What is entropy?
A measure of molecular disorder
What is an exergonic reaction?
Reaction that has a net release of free energy and is spontaneous (ΔG is negative)
What is an endergonic reaction?
Reaction that absorbs free energy from it’s surroundings and is nonspontaneous (ΔG is positive)
What are three main types of work a cell performs?
Chemical
Transport
Mechanical
What type of reaction does ATP drive and how?
Endergonic reactions by phosphorylation, transferring a phosphate group to another molecule, such as a reactant
What is the recipient molecule in phosphorylation called?
The phosphorylated intermediate
What are transport and mechanical work in the cell powered by?
ATP hydrolysis which leads to a change in protein’s shape and often its ability to bind to other molecules
What is a catalyst?
A chemical agent that speeds up a reaction without being consumes by the reaction
What is an enzyme
A macromolecule that acts as a catalyst (most enzymes are proteins)
What is activation energy?
The energy required to start a reaction by breaking bonds in the reactant molecules
How do enzymes catalyze reactions?
By reducing the activation energy, thereby increasing the rate of reaction
What is a substrate?
The reactant molecule on which an enzyme acts
What is an enzyme-substrate complex?
The enzyme and substrate bound together
What is the active site of an enzyme?
The region of an enzyme to which the substrate binds
What is induced fit?
An enzyme's shape and conformation changing over time in response to substrate binding
How are substrates held to an enzyme’s active site
By weak interactions like hydrogen bonds
How can an active site lower activation energy and speed up reactions?
By
Orienting substrates correctly
Straining substrate bonds
Providing a favorable microenvironment
Covalently bonding to the substrate
How can the rate of enzyme catalysis be sped up?
By increasing the substrate concentration
When does an enzyme become saturated?
When all enzyme molecules in a solution are bonded with substrate
How do you increase reaction speed at enzyme saturation?
By adding more enzyme
What type of factors can effect enzyme activity?
General environmental factors, such as temperature and pH
Chemicals that specifically influence the enzyme
What is a competitive inhibitor?
An inhibitor that binds to the active site of an enzyme and prevents the substrate from binding
What is a noncompetitive inhibitor?
An inhibitor that binds to an alternate site on the enzyme, causing the active site to change shape and become less effective
How to reversible enzyme inhibitors bind to enzymes?
By weak interactions
How to irreversible enzyme inhibitors bind to enzymes?
By covalent bonds
What is allosteric regulation?
When a regulatory molecule binds to a protein at one site and affects the protein’s function at another site (can either stimulate or inhibit an enzyme’s activity)
What is feedback inhibition?
When the end product of a metabolic pathway shuts down the pathway (prevents a cell from wasting chemical resources by synthesizing more product than is needed)
What is photosynthesis?
The process that converts solar energy into chemical energy
What are autotrophs?
Organisms that sustain themselves without eating anything derived from other organisms
What are heterotrophs?
Organisms that obtain their organic material from other organisms
Where does photosynthesis occur in plants?
In the leaves
What are stomata?
Microscopic pores on leaves where CO2 and O2 can exit