What is Chemistry?
Foundation of Biology
Elements in the same column have
The same valence and similar chemical properties
Weak Bonds
Hydrogen bonds , Attraction between + and - , Hydrophobic and hydrophilic interactions , Interactions with water
Strong Bonds
Covalent and Ionic
Nonpolar Covalent bonds
Pair of electrons shared equally by 2 atoms
Polar covalent bonds
Pair of electrons shared unequally by 2 atoms from differences in electronegativity
Electronegavtivity
Low to High on periodic table
Polarity allows water molecules to form
hydrogen bonds with each other
Four properties of water
Cohesive and Adhesive Behavior, Moderation of Temperature, Expansion upon Freezing, Solvent
Transpiration
Upward movement of water in plants, built of Cohesion and Adhesion
Cohesion
binding of like molecules
Adhesion
binding of unlike molecules
Evaporative cooling
as liquid evaporates, remaining surface cools like sweating
Expansion upon freezing
hydrogen bonds are more ordered and spread out
Hydrophillic (polar)
water loving
Hydrophobic (non polar)
water fearing
pH is the measure of
hydrogen ions (H+), the more H+ the more acidic
ph of 1-6
acidic
ph of 7
neutral , pH of blood
ph of 8-12
basic (alkaline)
All of life is built on
Carbon
Hydrocarbons
combination of C & H (nonpolar and stable)
Isomers
molecules with same molecular formula but different structure
What are the 3 types of isomers?
Structural isomers, Geometric isomers, Enantiomers
Four classes of organic molecules
Carbohydrates, Lipids, Proteins, Nucleic acids
Polymer
long molecule consisting of many similar building blocks
Monomer
small molecular building blocks with covalent bonds
Dehydration synthesis
occurs when two monomers bond together through the loss of a water molecule
Enzymes
proteins that speed up the rate of chemical reactions
Hydrolysis
water is added to break down polymers into monomers
Lysis means
break
Carbohydrates
include sugars and the polymers of sugars
Monosaccharides
simple sugars
Polysaccharides
many sugar building blocks
Disaccharides
formed when a dehydration reaction joins two monosaccharides
What type of polysaccharide is Starch?
storage polysaccharide of plants
What type of polysaccharide is Glycogen?
storage polysaccharide in animals
What type of polysaccharide is Cellulose?
structural, major component of the tough plant cell wall
What type of polysaccharide is Chitin?
structural, found in the exoskeleton of arthropods
Lipids
Hydrophobic Fats, Steroids, and Phospholipids
Fats
stores energy, glycerol + 3 fatty acids = triglyceride
Phospholipid
two fatty acids and a phosphate group are attached to glycerol
Steroids
carbon skeleton consisting of four fused rings
Protein Functions
Transport, Communication, Storage, Support
Amino Acids
contain carboxyl and amino groups, linked by peptide bonds
Polypeptides
polymers built from the same set of 20 amino acids
Four levels of protein structure
Primary, Secondary, Tertiary, Quaternary
Primary Structure
the sequence of amino acids in a protein
Secondary Structure
the coiling and folding of the amino acid chain
Tertiary Structure
determined by interactions between R groups (twists and turns)
Quaternary Structure
results when two or more Tertiary structures form one functional macromolecule (outside layer formed)
Denaturation
Loss of proteins native structure
Chaperonins
proteins that assist proper folding of other proteins, consists of hollow cylinder with a cap
Two types of Nucleic Acids
Deoxyribonucleic acid (DNA), Ribonucleic acid (RNA)
Double helix
two polynucleotides spiraling around an imaginary axis running from 5’ to 3’ in opposite directions
Nitrogenous Bases
Adenine, Thymine, Cytosine, Guanine
Purines
A and G (2 rings)
Pyrimidines
C, T, U (1 ring)
Base Pairings
A&T , C&G
Structural Isomers
different covalent arrangements of atoms
Geometric isomers
same covalent arrangement of atoms but different spatial arrangements
Enantiomers
mirror images of eachother
Saturated fatty acids
have the maximum number of hydrogen atoms possible and no double bonds
Unsaturated fatty acids
have one or more double bonds
Phospholipid structure
Tails = hydrophobic, Phosphate group head = hydrophilic