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Borrelia recurrentis

-spirochetes

-Louse-borne relapsing fever

-transmitted to humans by the human body louse (lice)

-recurring episodes of septicemia and fever

-doxycycline or erythromycin -bull's eye rash

Borrelia Ornithodorus

-spirochetes

-Tick-borne relapsing fever

-soft ticks

-ticks and rodents can be reservoirs

-recurring episodes of septicemia and fever due to body trying to remove the spirochetes

-doxycycline or erythromycin

Leptospirosis interrogans
-found in wild and domestic animals (zoonotic) -grows in kidney tubules -enters cuts/abrasions in skin and mucous membranes -obligately aerobic bacteria -two axial filaments for movement
Spirochetes group
-contracted via contact with infected urine or environment -can lead to kidney dysfunction if travels through bloodstream -found only in kidneys -antibody tests for diagnosis -eradication impractical due to the various animal reservoirs
Vibrios group
-curved rods -darting motility -oxidase positive -polar flagellum for movement -found in water environments -most pathogenic strains prefer warm, salty, alkaline water and can survive in **shellfish**
Vibrio cholerae
-can survive in freshwater -particularly O1 El Tor strain -can survive in shellfish -cholera toxin -adequate sewage and water treatment can limit spread -characteristic diarrhea symptoms -can lead to muscle cramping, kidney failure, coma, and death --“rice-water stool”; patient history -fluid and electrolyte replacement for treatment
Vibrios parahaemolyticus

-results from ingestion of shellfish

-causes cholera-like gastroenteritis

Vibrios vulnificus

-septicemia due to consumption of contaminated shellfish

-wound infections can result from washing wounds with contaminated seawater

Campylobacter jejuni

-most common cause of gastroenteritis in the United States -slightly curved, oxidase positive, and motile

-microaerophilic: grows in low O2 and capneic: thrives in high CO2 (how it differs from vibrios)

-zoonotic disease --> poultry, cattle, dogs/cats -adhesins, cytotoxins, and endotoxins

  • self-limiting bloody and frequent diarrhea

Helicobacter pylori
-slightly helical, motile -urease positive -colonizes in stomach -causes gastritis and most peptic ulcers --can lead to stomach cancer --gastric acid destroys epithelial cells and underlying tissue. -*proteins that inhibits acid production in stomach -flagella help the pathogen to burrow through the stomach lining -adhesins facilitate binding to gastric cells -exotoxins: cytotoxin-associated gene A product (CagA) -portal of entry: mouth -treat with antimicrobial drugs in combination with drugs that inhibit acid production
Viruses (general)
-cannot carry out any metabolic pathway -neither grow nor respond to the environment
intracellular state
-capsid removed -virus exists as nucleic acid -virus becomes active
extracellular state
-called virion -protein coat (capsid) surrounding nucleic acid -nucleic acid and capsid also called nucleocapsid -some have phospholipid envelope -outermost layer provides protection and recognition sites that bind to host cells
specific hosts
-only infect particular kind of cell in a particular host
general hosts (generalists)
-infect many kinds of cells in many different hosts including bacteria, archaea, protozoa, fungi, plants, animals and humans. **ex: influenza virus, West Nile virus
enveloped virion
-a virus with an outer envelope surrounding the capsid
non-enveloped or naked virion
-virion without an envelope
matrix proteins
-fill the region between capsid and envelope
lysogeny
-modified replication cycle -infected host cells grow and reproduce normally for generations before they lyse -temperate phages or lysogenic phages -basically, it involves the incorporation of the viral genome into the host cell genome, infecting it from within
attachment of animal viruses
-direct penetration -membrane fusion -endocytosis
synthesis of animal viruses
-DNA viruses often enter the nucleus, except poxviruses -RNA viruses often replicate in the cytoplasm
replication of dsDNA viruses
dsDNA --> mRNA --> viral proteins
replication of ssDNA viruses
ssDNA --> dsDNA --> mRNA --> viral proteins
replication of retroviruses
+ssRNA --> +ssRNA --> DNA --> viral proteins --> (acts as mRNA)
assembly and release of animal viruses
-enveloped viruses cause persistent infections -naked viruses are released by exocytosis or lysis
culturing viruses in the laboratory
1) culturing viruses in mature organisms -lysis of bacteria produces plaques --allows estimation of phage numbers by plaque assay 2) in embryonated chicken eggs -inexpensive, among the largest of cells, free of contaminating microbes, and contain a nourishing yolk 3) culturing viruses in cell tissue -diploid cell cultures --created from embryonic plant, animal or human --do not last more than 100 generations -continuous cell cultures --longer lasting --derived from tumor cells (HeLa)
Vibrio cholera
-can survive in freshwater -causes cholera (particularly O1 El Tor strain) -can survive in shellfish -cholera toxin -adequate sewage and water treatment can limit spread -characteristic diarrhea symptoms -can lead to muscle cramping, kidney failure, coma, and death --“rice-water stool”; patient history -fluid and electrolyte replacement for treatment
Vibrios vulnificus
-septicemia due to consumption of contaminated shellfish -wound infections can result from washing wounds with contaminated seawater
Vibrios parahaemolyticus
-results from ingestion of shellfish -causes cholera-like gastroenteritis
Campylobacter jejuni
-most common cause of gastroenteritis in the United States -slightly curved, oxidase positive, and motile -microaerophilic: grows in low O2 and capneic: thrives in high CO2 (how it differs from vibrios) -zoonotic disease --> **poultry**, cattle, dogs/cats -adhesins, cytotoxins, and endotoxins - self-limiting bloody and frequent diarrhea
Helicobacter pylori
-slightly helical, motile -urease positive -colonizes in stomach -causes gastritis and most peptic ulcers --can lead to stomach cancer --gastric acid destroys epithelial cells and underlying tissue. -*proteins that inhibits acid production in stomach -flagella help the pathogen to burrow through the stomach lining -adhesins facilitate binding to gastric cells -exotoxins: cytotoxin-associated gene A product (CagA) -portal of entry: mouth -treat with antimicrobial drugs in combination with drugs that inhibit acid production
intracellular state
-capsid removed -virus exists as nucleic acid -virus becomes active
extracellular state
-called virion -protein coat (capsid) surrounding nucleic acid -nucleic acid and capsid also called nucleocapsid -some have phospholipid envelope -outermost layer provides protection and recognition sites that bind to host cells
enveloped virus
-a virus with an outer envelope surrounding the capsid
non-enveloped or naked virion
-virion without an envelope
matrix proteins
-fill the region between capsid and envelope
lysogeny
-modified replication cycle -infected host cells grow and reproduce normally for generations before they lyse -temperate phages or lysogenic phages -basically, it involves the incorporation of the viral genome into the host cell genome, infecting it from
synthesis of animal virus
-DNA viruses often enter the nucleus, except poxviruses -RNA viruses often replicate in the cytoplasm
replication of dsDNA viruses
dsDNA --> mRNA --> viral proteins
replication of ssDNA viruses
ssDNA --> dsDNA --> mRNA --> viral proteins
replication of retroviruses
+ssRNA --> +ssRNA --> DNA --> viral proteins --> (acts as mRNA)
assembly and release of animal viruses
-enveloped viruses cause persistent infections -naked viruses are released by exocytosis or lysis
culturing viruses in the laboratory
1) culturing viruses in mature organisms -lysis of bacteria produces plaques --allows estimation of phage numbers by plaque assay 2) in embryonated chicken eggs -inexpensive, among the largest of cells, free of contaminating microbes, and contain a nourishing yolk 3) culturing viruses in cell tissue -diploid cell cultures --created from embryonic plant, animal or human --do not last more than 100 generations -continuous cell cultures --longer lasting --derived from tumor cells (HeLa)
DNA viruses (except poxviruses) often enter/replicate...
in the nucleus
RNA viruses often replicate..
in the cytoplasm
viroids
-extremely small, circular pieces of RNA that are infectious and pathogenic in plants -similar to RNA viruses, but lack capsid -may appear linear due to hydrogen bonding within the molecule
prions
-poteinaceous infectious agents first described by Stanley Prusiner in 1982 –lack nucleic acid -prion prp converts cellular prp (alpha helices) into beta-sheets
prion diseases
-fatal neurological degeneration, fibril deposits in brain, and loss of brain matter -large vacuoles form in brain -characteristic spongy appearance ---spongiform encephalopathies – bovine spongiform encephalopathy, creutzfeld jakob disease, scrapie, kuru -transmitted by ingestion, transplantation, or contact of mucous membranes with infected tissues -prions only destroyed by incineration or autoclaving in 1 N NaOH or by prionzyme -no treatment
Poxviridae group
-dsDNA -complex capsids and envelopes -largest human pathogenic viruses; infects mammals -species specific -infection through close contact (inhalation)
Smallpox (variola)

-virus moves via the blood to the skin, where it produces

-scars result on the skin, especially on the face (lesions)

-infects internal organs, causing fever, malaise, and delirium

  1. macule

  2. papule

  3. vesicle

  4. pustule

  5. crust

  6. scar

-the first human disease to be eradicated

Factors that enabled the eradication of smallpox

  1. Inexpensive, stable, and effective vaccine

  2. No animal reservoirs

  3. Obvious symptoms allow for quick diagnosis and in quarantine

  4. Lack of asymptomatic cases

  5. Virus is only spread via close contact

  6. Stocks of the virus are maintained in laboratories in the U.S. and Russia

Molluscum Contagiosum (Molluscipoxvirus)

-skin disease characterized by pearly white to light pink, smooth, waxy papules (appear tumor-like)

-typically on face, trunk, and external genitalia

-spread by children, sexually active ppl, or ppl AIDS

-treatment by removing nodules

Herpesviridae group
-enveloped polyhedral capsids and linear dsDNA -viral envelope fuses with the cell membrane to facilitate entry into cell -latent --virus enters sensory nerve cells and remains inactive inside infected cells --reactivation causes recurrence of the disease manifestations
Human Herpesviruses 1
-typically occur via casual contact in children -often result in slow-spreading skin lesions -oral herpes
Human Herpesviruses 2
-infections occur between ages of 15 and 29 from sexual activity -often result in slow-spreading skin lesions -genital herpes
Infections of Human Herpesviruses 1 and 2
-infected cells fuse with neighboring uninfected cells to form syncytium which helps in cell to cell spread -after a primary infection, viruses remain latent in ganglia -ocular condition -whitlow (inflammation of blisters) -neonatal condition -treatment: nucleoside analogs (not a cure)
Human Herpesvirus 3 (Varicella-Zoster Virus)

-causes chicken pox, found in children

-or causes shingles in adults

-chicken pox is highly infectious disease

-virus enters skin through the respiratory tract or eyes

-characteristic skin lesions (dew drops on rose petals)

-characteristic localization of shingle lesions along a band of skin, called a dermatome

Human Herpesvirus 4 (Epstein-Barr Virus) (EBV)

-transmission occurs via saliva

-large lobed B lymphocytes with atypical nuclei and neutropenia are characteristic features of infection

-causes:

-oral hairy leukoplakia,

-burrito's lymphoma,

-nasopharyngeal cancer,

-chronic fatigue syndrome,

-Burkitt's lymphoma: swollen jar

-infectious mononucleosis: swollen lymph nodes

Human Herpesvirus 5 (Cytomegalovirus) Infections

-infected cells become abnormally enlarged (owl’s eye)

-transmission occurs through bodily secretions

-requires close contact and a large exchange of secretion

--(sexual intercourse, in utero exposure, vaginal birth, blood transfusions, and organ transplants)

-complications in fetuses, newborns, and immunodeficient patients

-treatment: Fomiversen for eye infections

Human herpesvirus 6 (HHV-6)

-causes roseola

-characterized by pink rash on face, neck, trunk, and thighs

-may be linked to multiple sclerosis

-can cause mononucleosis-like symptoms

-may make individuals more susceptible to AIDS

Human herpesvirus 8 (HHV-8, Rhadinovirus)

-associated with Kaposi’s sarcoma, a cancer often seen in AIDS patients

-it is a rare and malignant neoplasia of blood and blood vessels

Papillomavirus

-causes warts

--seed warts, plantar warts, flat warts, genital warts (condylomata acuminata)

-genital warts associated with an increased risk of cancer

-transmitted via direct contact and via fomites

-diagnose cancers by inspecting genitalia and by a PAP smear

-gardasil vaccine (three doses for all females 11-26 yrs of age) effective against most strains of cervical cancer

Polyomavirus

-capable of causing tumors in animals and humans

--BK virus: potentially severe urinary tract infections can develop

--JC virus: can cause progressive multifocal leukoencephalopathy in which viruses can infect and kill oligodendrocytes of CNS

Adenoviridae group

-contain single, linear dsDNA genome contained in a naked polyhedral capsid with spikes

-one of many causative agents of the “common cold”

-respiratory infections

-infection of the intestinal tract can produce mild diarrhea

-infection of the conjunctiva can result in pinkeye

-gamma interferon treatment

Hepadnaviridae group
-invade and replicate in liver cells -unique genome that is composed of both single’ and double-stranded DNA -replicates through an RNA intermediary by using reverse transcriptase enzyme
Hepatitis B

-causes hepatitis (inflammation of the liver)

-the only DNA virus that causes hepatitis

-jaundice, a yellowing of the skin and eyes, occurs when bilirubin accumulates in blood

-liver cells continually release virions into the blood

-virions are shed into saliva, semen, and vaginal secretions

-transmitted when infected body fluids contact breaks in the skin or mucous membranes

-can lead to liver cancer

-virus spread through infected needles, sex, and passage to babies

Hepatitis B (2)

-diagnose by detecting presence of viral antigens

--dane, spherical, and filamentous particles for diagnosis

-alpha-interferon treatment

-liver transplant required for end-stage chronic disease

-3 doses of vaccination

Parvoviridae group

-only human pathogen with a ssDNA genome

-smallest of the DNA viruses

-B19 virus is the primary parvovirus of humans

--causes erythema infectiosum

-results in a reddening of the skin beginning on cheeks

-also called fifth disease or slapping disease

-the other four diseases that cause rashes are scarlet fever, rubella, roseola, and measles

-sunlight aggravates condition

many RNA viruses

have a segmented genome: more than one molecule of RNA

Picornaviridae group

-naked, +ssRNA viruses

-smallest of the animal viruses

-comprises of several genera: enterovirus, hepatovirus and rhinovirus

rhinoviruses

-cause most cases of the common cold (along with adeno-, corona-, reo-, & paramyxoviruses)

-infections limited to the upper respiratory tract (33°C)

-a single virus is often sufficient to cause a cold

-pleconaril can reduce the severity and duration of colds

-handwashing!!

enteroviruses

-transmitted via the fecal-oral route -ingestion of contaminated food or water -infect the pharynx and intestine -cytolytic -three main viruses: --polioviruses, coxsackieviruses, and echoviruses

polioviruses

-causes poliomyelitis

--asymptomatic infections (almost 90%)

--minor polio (5%): fever, headache, sore throat

--nonparalytic polio (2%)

--paralytic polio (less than 2%)

---bulbar poliomyelitis (brain stem and medulla are infected)

--postpolio syndrome 2 vaccines:

-inactivated polio vaccine (IPV)

-oral polio vaccine (OPV)

Hepatitis A

-naked, +ssRNA virus

-noncytolytic picornavirus

-transmitted through the fecal-oral route

-signs and symptoms: fever, nausea and jaundice are due to the patient’s immune response

-does NOT cause chronic liver disease

-enteric: contaminated food/water/etc

-two doses are recommended for all children and adults

Caliciviruses and Astroviruses

-naked, +ssRNA virus

-star-shaped polyhedral capsids

-causes acute gastroenteritis

-outbreaks in day care centers, schools, hospitals, cruise ships

-best known virus is: Norovirus --causes diarrhea, nausea and vomiting

-incubation period is 24 hrs

Hepatitis E

-naked, +ssRNA virus

-also known as enteric hepatitis

-fatal in 20% of pregnant women

-prevent by interrupting the fecal-oral route of transmission

Togaviridae and Flaviviridae group

-enveloped, +ssRNA virus

-designated as Arboviruses (Arthropod-borne)

-mosquitoes and ticks transmit arboviruses among animal hosts causing zoonotic diseases

-arthropod vectors remain infected

-most infections result in mild, flu-like symptoms

Togavirus

-enveloped, +ssRNA virus

-equine encephalitises

-eastern equine encephalitis (EEE)

-western equine encephalitis (WEE)

-venezuelan equine encephalitis (VEE)

-viral replication occurs in horses and humans

-normal host is a bird or rodent

-mosquitoes are vectors

Rubella virus (Togaviridae)

-enveloped, +ssRNA virus

-also called “German measles” or “three day measles” (mild)

-one of the five childhood diseases that produces skin lesions (other four are measles, roseola, chickenpox, fifth disease)

-infection begins in respiratory system but spreads throughout the body

-rash of flat, pink to red spots

-not serious in children, but adults can develop arthritis or encephalitis

-infection of pregnant women can cause congenital defects

-vaccination

Flavivirus

-enveloped, +ssRNA virus

-causes West Nile Encephalitis

-flu-like symptoms and encephalitis after being bitten by mosquitoes

-Aedes mosquito transmits virus that causes dengue fever

-first phase of high fever and severe pain in head, neck and muscles (breakbone fever)

-second phase: return of fever and bright red rash

-reinfection causes dengue hemorrhagic fever

Yellow fever virus (Flaviviridae)

-involves degeneration of the liver, kidneys, heart and massive hemorrhaging resulting in “black vomit”

Chickengunya virus (Flaviviridae)

-rash, nausea, joint pain

Zika virus (Flaviviridae)

-fever, rash, joint pain, microencephaly

-diagnosis by serological tests like ELISA and agglutination test

-prevention by vaccination for Yellow fever

-no vaccine

Hepatitis C (Flaviviridae)

-enveloped, +ssRNA virus

-spread through needles, organ transplants, and sexual activity but not by arthropod vectors

-chronic infection with few if any symptoms

-severe liver damage and liver failure can occur over time

-sofosbuvir (inhibits protease) cures most people within 12 weeks

-no vaccine

Coronaviridae group
-enveloped, +ssRNA virus -corona-like halo formed by their envelopes -transmitted via large droplets (coughing, sneezing, talking, breathing) from the upper respiratory tract -second most common cause of colds *three main viruses: -severe acute respiratory syndrome (SARS-CoV), Middle East respiratory syndrome (MERS-CoV), and COVID-19 (SARS-CoV2) -zoonotic disease -distinctive envelopes with glycoprotein spikes that resemble flares from the corona of the sun
ACE-2 receptor is present

on lung, heart, brain, kidney, gastro-intestinal cells as well as cells of blood vessels and testis

-promotes viral reuptake and fusion at the cellular membrane

coronavirus virion and life cycle
• coronavirus particles bind to cellular receptors (such as angiotensin-converting enzyme 2 (ACE2)) promote viral uptake and fusion at the cellular or endosomal membrane • following entry, release and uncoating of the incoming genomic RNA takes place • after translation of structural proteins, they translocate into endoplasmic reticulum (ER) membranes and transit through the ER-to-Golgi intermediate compartment (ERGIC) • finally, virions are secreted from the infected cell by exocytosis
pathogenesis of COVID-19
-blood clotting abnormalities -neurological complications -cardiovascular disease (cytokine storm) -gi complications -renal failure (cytokine storm)
COVID-19 vaccines
-mRNA vaccines (moderna, pfizer) --two dose vaccines 21-28 days apart -inactivates SARS-CoV-2 vaccine --covaxin (developed in India) --sinovac (developed in China)
COVID-19 treatment

monoclonal antibody therapy:

-Eli Lily and Co

-Regeneron

-Mabs

Antivirals: -Remdesivir: nucleoside analog and inhibits the RNA-dependent RNA polymerase -Ritonavir (oral) -Molnupiravir increases the frequency of viral RNA mutations and impairs replication

Retroviridae group

-enveloped, +ssRNA viruses with reverse transcriptase

-genomes contain two identical molecules of positive ssRNA and contain the enzymes reverse transcriptase, protease, and integrase

-transcribe dsDNA from ssRNA using reverse transcriptase

--Human T-lymphotrophic viruses: cancer of lymphocytes

-Lentivirus human immunodeficiency viruses (HIV-1 & 2)

Acquired Immunodeficiency Syndrome (AIDS)

-certain opportunistic or rare infections that occur in the presence of antibodies against HIV and a CD4 white blood cell count below 200 cells/microliter of blood

Human Immunodeficiency Syndrome (HIV)
-likely arose from mutation of simian immunodeficiency virus, emerged in human population in Africa in about 1930 -only replicates in humans and destroys the human immune system
HIV-1
-prevalent in the United States and Europe
HIV-2
-prevalent in West Africa
gp120 (HIV)
-primary attachment molecule, responsible for antigenic variability, binds to CD4 receptor molecules on a host cell
gp41 (HIV)
-promotes fusion of the viral envelope with the target cell, forms syncytium
Immunosuppressive Retroviruses (Lentivirus) and AIDS
details of synthesis and latency 1) reverse transcriptase transcribes dsDNA from ssRNA --antigenic variants of HIV result from errors introduced in the genome during transcription 2) dsDNA provirus enters the nucleus --viral integrase inserts provirus into a human chromosome --integrated DNA passed to progeny cells during replication --provirus can remain dormant for years -macrophages and monocytes are major reservoirs
Immunosuppressive Retroviruses (Lentivirus) and AIDS (2)
details of release, assembly, and maturation 1) HIV exits cell at lipid rafts in the cytoplasmic membrane --lipid raft components become the viral envelope 2) capsomeres form immature capsid outside the cell 3) viral protease releases proteins that produce a mature virus --protease inhibitors used to treat HIV
Diseases associated with AIDS
-herpes -kaposi's sarcoma
AIDS treatment
-ART (Antiretroviral therapy) currently used to reduce viral replication --cocktail of antiviral drugs including nucleotide analogs, protease inhibitors, integrase inhibitors, and reverse transcriptase inhibitors
Paramyxoviridae group
-enveloped, unsegmented -ssRNA viruses -cause cells to fuse and form giant, multinucleate syncytia --syncytia enable the virus to evade the immune system

Measles virus (Paramyxoviridae)

-spread in the air via respiratory droplets

-viruses infect the respiratory tract then spread throughout the body

-koplik’s spots appear on the mucous membrane of the mouth

-lesions then appear on the head and spread over the body -rare complications can result in:

  • pneumonia, encephalitis, and subacute sclerosing panencephalitis (SSPE)

-MMR vaccine

-anti-viral immunoglobulin for prevention

Parainfluenza virus

-causes croup: severe condition characterized by inflammation of larynx, trachea, bronchi, and a “seal bark” cough

--most patients recover within two days

Mumps virus

-transmission occurs via respiratory secretions -causes parotitis: painful enlargement of the parotid salivary glands --orchitis (inflammation of the testicles), meningitis, pancreatitis, or deafness in one ear can occur -MMR vaccine

Respiratory syncytial virus) - RSV

(Pneumovirus)

-causes a disease of the lower respiratory tract, particularly in children

-transmission occurs via fomites, hands, and respiratory droplets

-the virus causes syncytia formation in the lungs

-infection can also result in difficult breathing known as dyspnea

-leading cause of fatal respiratory disease in infants and children (day care centers)

-treatment is supportive-oxygen or ribavrin

Rabies (Rhabdoviridae)

-enveloped, unsegmented -ssRNA viruses

-bullet-shaped

-classical zoonotic disease of mammals

-primary reservoir in urban areas is the dog

-bats are the source of most cases in humans

-specific neurological manifestations: hydrophobia, seizures, disorientation, hallucination, paralysis

-diagnosed by finding Negri bodies in the brain

-treatment by immune globulin (HRIG) or vaccination with human diploid cell vaccine (HDCV) at days 0, 3, 7 and 14 days after exposure

Ebola Virus (Filoviridae)

-enveloped, unsegmented -ssRNA viruses

-causes hemorrhagic fever -

form long filaments

-biosafety level 4 pathogens (BSL4)

-found in Germany, Zimbabwe, Kenya, Uganda, Angola

-natural reservoir is fruit bats

-spreads via direct contact with bodily fluids including semen and wastes of its victims

-virions attack many cells, especially macrophages and liver cells

-causes uncontrolled bleeding under the skin and from every body opening

-up to 90% of human victims die if left untreated

-ELISA test or PCR for diagnosis

-ZMapp antiviral treatment which is antibodies against the virus

Influenza types A and B (Orthomyxoviridae)

-enveloped, segmented -ssRNA viruses

-infection occurs primarily through inhalation of airborne viruses

-symptoms include fever, pharyngitis, congestion, dry cough, malaise, headache, and myalgia

--induced by cytokines released as part of the immune response -each virion is segmented, having 8 different –ssRNA molecules (variable)

-hemagglutinin (HA) glycoprotein spikes

--attach to pulmonary epithelial cells or trigger endocytosis

-neuraminadase (NA)

--provide the virus access to cell surfaces by hydrolyzing the mucus in the lungs

antigenic drift

-minor variations -consists of small changes (or mutations) in the genes of influenza viruses that can lead to changes in the surface proteins of the virus, HA (hemagglutinin) and NA (neuraminidase)

-slight changes

-one strain enters

-you will have most of the antibodies (70%) if reinfected

antigenic shift

-major variations -the process by which two or more different strains of a virus, or strains of two or more different viruses, combine to form a new subtype having a mixture of the surface antigens of the two or more original strains

-2 different strains enter

-completely different new 3rd strain

-no antibodies against this strain

Influenza (2)

-sudden fever, pharyngitis, congestion, cough, headache, myalgia

-viruses enter the body via the respiratory route

-incubation period is about one day

-for treatment: oseltamivir pills or inhaled zanamivir mist are neuraminidase inhibitors

--must be administered within first 48 hours of infection

-prevention: immunization with multivalent vaccines

Hepatitis D (Arenaviruses)

-enveloped, segmented -ssRNA viruses

-transmitted through bodily fluids via sexual activity and contaminated needles

-requires hepatitis B virus to be virulent because this virus can’t attach to liver cells

-plays a role in triggering liver cancer

-vaccination against hepatitis B limits spread of this virus

Reoviridae group
-naked, segmented dsRNA viruses -only microbes with genomes composed of double- stranded RNA -originally considered respiratory enteric orphans
Rotavirus (Reoviridae)

-only double stranded RNA

-most common cause of infantile gastroenteritis, unique wheel-like appearance

-transmitted via the fecal-oral route

-significant cause of death in developing countries

Pathogenic fungi (1)
-Chemoheterotrophic (energy source is chemical compounds and carbon source is organic compounds) -cell walls composed of chitin -lack chlorophyll --> no photosynthesis 1) fungal infections --typically acquired via inhalation, trauma, or ingestion --caused by presence of true pathogens or opportunists 2) toxicoses (poisonings) --acquired through ingestion of mycotoxins, e.g. aflatoxin --mycetismus occurs when poisonous mushrooms are eaten 3) allergies (hypersensitivity reactions) --most often result from the inhalation of fungal spores
Pathogenic fungi (2)
-sabouraud dextrose agar used to culture fungi -KOH preparations, Gomori methenamine silver stain, direct immunofluorescence stain --used to detect fungal cells in patient specimens -amphotericin B is gold standard of antifungals -azoles, 5-fluorocytosine, & griseofulvin, echinocandins for treatment
Systemic mycoses caused by PATHOGENIC fungi
-caused by one of four fungi: --**Blastomyces, Coccidioides, Histoplasma, and Paracoccidioides** -acquired through inhalation: --begins as generalized pulmonary infection --then disseminates via the blood to the rest of the body -dimorphic: 2 distinct forms -spherical yeast forms are invasive, express enzymes that aid in survival, tolerant of higher temperatures, and resistant to phagocytosis -mycelial forms (in environment below 30⁰C)
Histoplasma capsulatum

-most common fungal pathogen affecting humans

-intracellular parasite and is phagocytosed by alveolar macrophages

-mostly in the eastern United States (Ohio river valley) but also in Africa and South America

-fungi found in moist soils containing high nitrogen levels (bird and bat droppings in soil)

-inhalation of spores into the lungs

Histoplasma capsulatum (2)
results in one of four major diseases: 1) chronic pulmonary condition ---coughing, blood-tinged sputum, weight loss, often mistaken for TB 2) chronic cutaneous condition ---ulcerative skin lesions 3) systemic condition ---enlargement of spleen and liver, fatal; **in AIDS patients** 4) ocular condition ---type I hypersensitivity reaction in the eye -diagnosis based on distinctive budding yeast in samples and dimorphism of cultures; **characteristic spiny spores** -Amphotericin B is preferred drug of choice
Blastomyces dermatitidis

-endemic in the southeastern United States north to Canada

--pulmonary condition is the most common manifestation

-symptoms vague like muscle aches, cough, fever, chills, and weight loss

-other conditions:

--cutaneous condition (spread from lungs to skin); osteoarticular condition, meningitis

-diagnosis is by observation of dimorphism in lab culture (large round budding yeast)

Coccidioides immitis

-almost exclusively in the southwestern United States & Northern Mexico (California, Nevada, Arizona, New Mexico, Texas)

-found in desert soil

-if inhaled, asexual spores called arthroconidia germinate into spherules (encapsulated yeasts) in the lung

-most often result in pulmonary conditions

-diagnosis by coccidiodin skin test

-treatment by Amphotericin B; maintenance with azoles

Paracoccidioides brasiliensis

-found in cool damp soil of southern Mexico and regions of South America

-disease found most in farm workers in endemic areas

-painful ulcerated lesions of gums, tongue, lips, and palate

-diagnosis: staining reveals yeast cells with multiple buds in a “steering wheel” formation

-treatment is with amphotericin B or ketoconazole

Systemic mycoses caused by OPPORTUNISTIC fungi
-these types of mycoses don’t typically affect healthy humans -infections limited to people with poor immunity -more important as the number of AIDS patients rises -four genera routinely encountered ---pneumocystis, candida, aspergillus, cryptococcus,
Pneumocystis jiroveci

-causes cysts in lung tissue

-presence of the disease is almost diagnostic for AIDS

-inflammation, fever, difficulty in breathing and non productive cough are characteristic

-can result in death if left untreated

-treatment: trimethoprim and sulfanilamide

Candida albicans

-includes various opportunistic infections and diseases

-common members of microbiota of skin and mucous membranes

-transmitted between individuals

-can be passed on to babies during childbirth or to men during sexual contact

-can produce a wide range of diseases

• oropharyngeal condition or thrush (oral)

• diaper rash

• nail infection (onychomycosis)

• ocular condition

• vaginal condition: if pH becomes alkaline, or after antibiotic therapy

-diagnosis: clusters of budding yeast and pseudohyphae (series of buds remaining attached to the parent cell)

-treatment : nystatin, azoles

Aspergillosis
-can be found throughout the environment in soil, food, compost, etc. -disease occurs from the inhalation of the fungal spores -three pulmonary diseases may develop 1) hypersensitivity condition • manifests as asthma or other allergic symptoms 2) noninvasive condition • ball-like masses of fungal hyphae form in the cavities 3) acute invasive pulmonary condition • may present as pneumonia 4) cutaneous and systemic conditions may also occur
Cryptococcus neoformans

-results from inhalation of spores or dried yeast in bird droppings

-predilection for the central nervous system

  1. meningitis condition • most common clinical form of infection • follows dissemination of the fungus to the CNS -other clinical manifestations- pulmonary or cutaneous conditions -diagnosis: presence of a phagocyte resistant capsule surrounding the yeast form is highly suggestive --yeasts multiply in the lungs and spread to other parts of the body

superficial mycoses

-infections confined to the outer, dead layers of the skin, nails, hair

--keratin primary food of these fungi

-black and white piedra (stone-like) are superficial infections of the hair shafts

-dermatophytoses

• fungal infections of the skin, nails, or hair caused by dermatophytes

• variety of clinical manifestations like athlete’s foot, jock itch, onychomycosis

-pityriasis: infection of the skin causing disruption of melanin production to produce discolored patches: caused by Malassezia furfur

cutaneous and subcutaneous mycose

-mycetomas: tumor-like infections

-sporotrichosis (rose-gardener’s disease)

• acquired from inoculation of soil fungi by thorn pricks

parasitic diseases
-occur among people in rural, undeveloped, or overcrowded places -emerging as serious threats in developed nations *definitive host* • mature forms of parasite are present and usually reproducing *intermediate host* • immature parasites undergo various stages of maturation -infection of humans in one of three ways: 1) ingestion 2) vector-borne 3) direct contact
trophozoites
the feeding and reproducing stage that lives within the host • undergo encystment before leaving the host in feces
cysts
the dormant, infective form that survives in the environment • undergo excystment when ingested developing into trophozoites
Balantidium coli (Ciliates)

-protozoa that use cilia in their trophozoite stage

-only known ciliate known to cause disease in humans

-commonly found in animal intestinal tracts

-humans infected by food or water contaminated with feces containing cysts

-trophozoites attach to mucosal epithelium lining the intestine

-causes infection in people with lowered immune health

• persistent diarrhea, abdominal pain, and weight loss

• severe infections produce dysentery

-presence of trophozoites diagnostic

-treatment: tetracycline

Amoebae group
• protozoa with no truly defined shape • move and acquire food through the use of pseudopodia • found in water sources throughout the world
Entamoeba histolytica

-carried asymptomatically in the digestive tracts of humans -infection occurs by drinking water contaminated with feces containing cysts

-three types of amebiasis can result from infection

  1. luminal amebiasis

  2. invasive amebic dysentery (bloody mucus stools and
    pain)

  3. invasive extraintestinal amebiasis -presence of trophozoites in fecal smear used for diagnosis -active stage that exists in host and in fresh loose feces -prevention: safe drinking water;

-contracted by food or water contaminated by cysts which then hatched and invaded his large intestine

-treatment: paromomycin or iodoquinol

Acanthamoeba
-rare; ~400 cases worldwide -occurs through cuts, scrapes, the conjunctiva, or inhalation -keratitis due to conjunctival inoculation -amebic encephalitis is the more common disease -diagnosis by detection of trophozoites in corneal scrapings, CSF -prevention difficult since organisms are environmentally hardy
Naegleria (Amoeba)

-infection occurs when swimmers inhale contaminated water

-unchlorinated water, Neti pots

-amoebic meningoencephalitis can result

-“brain-eating amoeba”

-diagnosis by detection of trophozoites in corneal scrapings, CSF

-prevention difficult since organisms are environmentally hardy

Trypanasoma cruzi (Flagellates)

-causes Chagas’ disease; is endemic in Central and South America

-opossums and armadillos are the primary reservoir

-transmission occurs through bite of insects in genus Triatoma

-"kissing bugs” feed preferentially from blood vessels in the lips

-acute stage characterized by chagomas (swellings at the bite site)

-symptomatic stage characterized by congestive heart failure following formation of pseudocysts (clusters of amastigotes in heart tissue)

-parasite-induced heart disease is a leading cause of death in Latin America

-diagnosis: mature flagellated trypanosomes in blood/lymph

-treatment: benzinidazole or nifurtimox

Trypanosoma brucei (Flagellates)

-causes African sleeping sickness

-the insect vector is the tsetse fly

-humans usually infected when bitten by infected tsetse flies

-fever, lymph node swelling, and headaches

-meningoencephalitis

Leishmania (Flagellates)

-endemic in parts of the tropics and subtropics (Central and South America)

-wild and domestic dogs and small rodents are common hosts

---zoonosis, transmitted by sandfly

-has two developmental stages

  1. amastigotes (lack flagella) • multiply in host’s macrophages and monocytes

  2. promastigotes (flagellated) • develop extracellularly within a vector’s gut

Leishmania (Flagellates) (2)

-three clinical forms often observed:

  1. cutaneous condition: large painless sores on head and face region

  2. mucocutaneous condition • single or multiple lesions at mucosal sites of infection • can cause respiratory problems

  3. visceral condition (kala-azar): fatal

    -most cases heal without treatment

    -diagnosis by identification of amastigotes in samples from cutaneous lesions, spleen, bone marrow

-prevention limited to reducing exposure to reservoir and vector

Giardia intestinalis (Flagellates)

-common gastrointestinal disease in the United States

-ingest cysts in contaminated water or when swimming

-life cycle similar to that of Entamoeba

-trophozoites multiply in the small intestines (resemble a face)

-foul smelling stools (“rotten egg” smell)

-diagnosis: oval cysts in stool, xTAG GPP test for the presence of its DNA

-treatment: Metronidazole drug of choice

-prevent infections in endemic areas by use of filtered water -causes beaver fever

Trichomonas vaginalis (Flagellates)

-lives in the genitourinary system of men and women

-transmitted almost exclusively via sex

-occurs in people with preexisting STD or multiple sex partners

-infection of women results in vaginosis

-diagnosis by microscopic observation of actively motile trophozoites in vaginal and urethral secretions

-trophozoites are flat, possess five flagella and a sail-like undulating membrane -diagnosis: immunoassay -treatment: metronidazol

Plasmodium (Apicomplexans)

-causative agent of malaria: endemic throughout the tropics and subtropics -four species cause malaria -mosquitoes of genus Anopheles are vectors -life cycle has three prominent stages

  1. exoerythrocytic stage (liver phase in humans)

  2. erythrocytic cycle (within RBCs in humans)

  3. sporogonic phase (in mosquitoes)

-diagnosis: characteristic ring like trophozoites within erythrocytes

Plasmodium (Apicomplexans) (2)

-symptoms of malaria associated with cycles of erythrocyte lysis

• fever, chills, anemia, weakness and fatigue

-can cause blackwater fever

• high fever, erythrocyte lysis, renal failure, and dark urine

-cerebral malaria results in tissue death in the brain

-diagnosis: ring-like trophozoites within erythrocytes

-treatment: Chloroquine, mefloquine or atovaquone with proguanil

-prevent malaria by limiting contact with mosquitoes

Toxoplasma gondii (Apicomplexans)

-wild and domestic mammals and birds are major reservoir

-cats are the definitive host

-infection due to consumption of undercooked meat containing the parasite

-ingestion or inhalation of contaminated soil can also occur

-can cross the placenta and infect the fetus

-transplacental transfer can result in still births, abortions, mental retardation, blindness, jaundice, etc.

-more severe in AIDS patients

-treatment: clindamycin